Mistakes Happen
From time to time ponyville will grow dark due to a rogue storm blowing in from the everfree forest. pegasi would fly around warning the inhabitants of ponyville to go indoors as the rogue storms were too wild for the pegasi team to handle.
Transcend - Part 2
Ah gotta go to ponyville during the trek and buy some stuff. "is ponyville far?" chrysalis asked curiously. with all of the staggering around during the storm, she didn't even know the general direction of ponyville, let alone the distance.
The First Cracks Form
I certainly did not expect them to start prodding me about my attraction towards a certain commoner in ponyville this morning. hail, sister! what brings you to ponyville?
Saynir's story
When she returned to ponyville they kindly told her to gtfo with her new dragon friend and they were both like "welp, these dudes are assholes, let's go live in the caves." and so they did.
MLP: Rise of Nightmares
The summer sun celebration is being held in ponyville again this year, why don't you and i go and make sure things are going smoothly hmm? i'm sure a certain unicorn can't wait to see you again." lunar teased.
Welcome to Equestria chapter 6
Anyway, going to meet up with them at the party pinkie is planning for them, like she does with most everypony that decides to stay in ponyville.
Alter Destiny Chapter 2
She found herself in a pasture that seemed to be near ponyville in the middle of a bright sunny day. there was one oddity though. a strange door stood near her and seeming lead to nowhere.
[Commission] Thievery: The Ruins of Expansion; or the criminal teacher and her flaming butt
Although the villa was a bit outside of ponyville, cheerilee made sure to sneak her way there, a healthy dose of paranoia being a good friend to anypony doing anything outside the realms of civilized society.
Lessons In Happiness - Chapter 5
Lessons in happiness - chapter 5 over the next few days, i became better acquainted with most of the ponies of ponyville, but there were a few who instantly became my close friends.
Giving Love a Helping Hoof: Chapter 2
To the absolute horror and complete chagrin of fluttershy, ponyville's bounciest citizen, pinkamena diane pie, chose that moment to ask, "what was it like?"
Kingdom Hearts: The Path of the Heart Episode 1: An Unexpected Journey
I just wanted throw a great, big, super ginormous, spectacular welcome party, and had to invite everypony in ponyville. see? and now you have lots and lots of friends."
Chapter Three: Explained Extractions, Unknown Reasons (edit 2/13/2015)
The farthest back i can go is when you were sent to ponyville not long before the return of nightmare moon.